Amyloid 39 -42  -peptides are the main components of amyloid plaques found in the brain of Alzheimer's disease patients. Amyloid 39 -42 -peptide is formed from amyloid precursor protein by the sequential action of -and ␥-secretases. Asp-2 is a transmembrane aspartic protease expressed in the brain, shown to have -secretase activity. Mature Asp-2 has four N-glycosylation sites. In this report we have characterized the carbohydrate structures in this glycoprotein expressed in three different cell lines, namely Chinese hamster ovary, CV-1 origin of SV40, and baculovirus-infected SF9 cells. Biantennary and triantennary oligosaccharides of the "complex" type were released from glycoprotein expressed in the mammalian cells, whereas mannose-rich glycans were identified from glycoprotein synthesized in the baculovirus-infected cells. Site-directed mutagenesis of the asparagine residues at amino acid positions 153, 172, 223, and 354 demonstrate that the protease activity of Asp-2 is dependent on its glycosylation.One of the key pathological features of Alzheimer's disease is the formation of brain plaques primarily due to the fibrilization of amyloid 39 -42 -peptides (A) 1 (1, 2). The formation of these peptides by the action of proteases on amyloid precursor protein (APP) has been the subject of several studies (3, 4), as the identification of these proteases could lead to the discovery of inhibitors useful in the treatment of Alzheimer's disease. Over the last year there have been a number of reports detailing the discovery, purification, and characterization of a transmembrane aspartic proteinase (Asp-2). This glycoprotein has been shown to cleave the APP at the -secretase site (5-9). High levels of this proteinase were identified in the human brain, and the enzyme activity was found in cells associated with the central nervous system (7) and in cell lines known to produce A via cleavage of APP (5).Asp-2 contains four potential N-linked glycosylation sites at the following asparagine residues: Asn 153 , Asn 172 , Asn 223 , and Asn 354 . The close proximity of some of these glycosylated sites to the three intramolecular disulfide linkages and the catalytic site of Asp-2 has been the subject of more recent interest (10), especially because the type and extent glycosylation of a protein can have a profound effect on its physico-chemical properties (11). For instance, it is well known that N-linked oligosaccharides can influence glycoprotein folding in the endoplasmic reticulum (12) and can protect a protein from protease attack (13).The N-linked oligosaccharide structures on Asp-2 have not yet been characterized in detail, although it has been reported that all four asparagine sites have a heterogeneous mixture of carbohydrate attached (10). Another report has indicated that the glycans in mature Asp-2 are of the complex type, as removal of this carbohydrate is not possible by endoglycosidase H treatment (14).In this study we have released and analyzed the N-linked glycans from Asp-2 expressed as an Fc fusion in ...