Fluorination represents an important strategy in developing highperformance conjugated polymers for photovoltaic applications. Here, we use regioregular poly(3-ethylhexylthiophene) (P3EHT) and poly(3-ethylhexyl-4-fluorothiophene) (F-P3EHT) as simplified model materials, using single-molecule/aggregate spectroscopy and molecular dynamic simulations, to elucidate the impacts of backbone fluorination on morphology and excitonic coupling on the molecular scale. Despite its high regioregularity, regioregular P3EHT exhibits a rather broad distribution in polymer chain conformation due to the strong steric hindrance of bulky ethylhexyl side chains. This conformational variability results in disordered interchain morphology even between a few chains, prohibiting long-range effective interchain coupling. In stark contrast, the experimental and molecular dynamic calculations reveal that backbone fluorination of F-P3EHT leads to an extended rod-like single-chain conformation and hence highly ordered interchain packing in aggregates. Surprisingly, the ordered and close interchain packing in F-P3EHT does not lead to strong excitonic coupling between the chains but rather to dominant intrachain excitonic coupling that greatly reduces the molecular energetic heterogeneity.fluorinated polythiophenes | photophysics | single-molecule spectroscopy | morphology | organic electronics M orphology and excitonic coupling are among the most important factors dictating the functions and performance of conjugated polymers (CPs) in a variety of optoelectronic applications (1-4). To tune and optimize the morphological and optoelectronic properties of CPs, chemical structure modification of the backbone and side chains is one of the main and most effective approaches (5-7). It has been revealed that the position, size, and length of side chains dramatically affect the morphology and optoelectronic properties of CPs. In the efforts to develop high-performance photovoltaic CPs, the introduction of fluorine atoms onto aromatic comonomers, i.e., the fluorination of polymer backbone, offers a very appealing strategy to tune the electronic properties, morphology, and photochemical stability (6-8). It is proposed that the inherent electronwithdrawing nature of fluorine atoms lowers the highest energy occupied molecular orbital energy levels, thereby increasing the open-circuit voltage in photovoltaics. In addition, the strong electronegativity might induce F-S and F-H interactions and potentially modifies the molecular conformation and intermolecular organization (6). Furthermore, it has been shown that fluorination often leads to enhanced thermal and oxidative stability (9-11). Given a combination of these desirable properties, fluorine-containing CPs have led to most of the best-performing polymer-based solar cells to date (12-15).For typical CPs, the primarily created exciton is Coulombically bound upon photoexcitation mainly due to the low dielectric constant and strong electron-phonon interaction in polymers. The interchain and intrachain morp...