Electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (ESI-MS/ MS) have been used to differentiate the 2-and 4-methylpyridyl isomers of free-base and metallated cationic -vinylpyridylporphyrins. The analysis by ESI-MS/MS of the deuterated analogs and semiempirical calculations of structural and electronic parameters were also undertaken. The two free-base isomers are easily differentiated by ESI-MS/MS but the presence of a metallic center renders differentiation of the metallated isomers less effective. The data acquired show that of all the studied compounds, the free-base 2-methylpyridyl isomer, which was operative in the in vitro photoinactivation of Herpes simples virus, has a different gas-phase behavior. Local distortion of the macrocycle due to the presence of the -vinylpyridyl substituent occurs for all the compounds, but a different electron density distribution can account for the observed gas-phase behavior of this potential virus photoinactivator. (J Am Soc Mass Spectrom 2007, 18, 218 -225 Viruses are responsible for a large number of infectious diseases. In particular, the Herpes simplex virus is one of the most common agents responsible for viral infections in man [5]. From preliminary virus inactivation studies carried out with Herpes simplex virus type 1 (HSV-1) using the cationic porphyrins 1 and 2 (Scheme 1), we have observed that despite their structural resemblance and their similar photocytotoxicity profiles, Compound 1 was very effective in the photoinactivation of the virus, whereas Compound 2 displayed no virucidal effect in the same conditions [6].Electrospray ionization mass spectrometry (ESI-MS) was successfully applied to characterize porphyrins as early as 1991 [7] and both ESI-MS [8 -11] and tandem mass spectrometry (ESI-MS/MS) [12,13] have been used to study neutral and cationic porphyrins since then. We wanted to know if the two porphyrin isomers, 1 and 2, could be differentiated by ESI-MS/MS and if the informa-