The use of a linear or two-dimensional (2-D) quadrupole ion trap as a high performance mass spectrometer is demonstrated. Mass analysis is performed by ejecting ions out a slot in one of the rods using the mass selective instability mode of operation. Resonance ejection and excitation are utilized to enhance mass analysis and to allow isolation and activation of ions for MS n capability. Improved trapping efficiency and increased ion capacity are observed relative to a three-dimensional (3-D) ion trap with similar mass range. Mass resolution comparable to 3-D traps is readily achieved, including high resolution at slower scan rates, although adequate mechanical tolerance of the trap structure is a requirement. [8 -11], and standard three-dimensional (3-D) ion trap mass spectrometers [12,13]. Several of the quadrupole based 2-D ion traps are capable of mass selective isolation and activation of ions including MS 3 analysis [7,9 -11]. Syka and Fies have described the theoretical advantages of 2-D versus 3-D quadrupole ion traps for Fourier transform mass spectrometry [14]. These advantages include reduced space charge effects due to the increased ion storage volume, and enhanced sensitivity for externally injected ions due to higher trapping efficiencies. Bier and Syka described several forms of linear and circular 2-D ion traps with larger ion capacity to be used as mass spectrometers [15] using the mass selective instability mode of operation [16] similar to that used in all commercial 3-D quadrupole ion trap instruments.Despite the previously described advantages and the recent progress with 2-D ion traps in hybrid instruments, only a few examples have appeared using these traps as stand-alone mass spectrometers. Senko et al. recently demonstrated image current detection with FT analysis in a 2-D ion trap which utilized independent detection electrodes between the quadrupole rods [17]. Although promising results were presented, space charge effects were found to limit this configuration's ultimate performance as the motion of the ions is largely restricted to one of the symmetry planes of the device. The relative insensitivity of the image current ion detection scheme precluded the use of lower numbers of trapped ions to avoid such space charge effects.Welling et al. demonstrated two variations of mass selective instability in a stand-alone 2-D quadrupole ion trap [18]. The first method, referred to as "q-scanning", exploited the field penetration of the detector between the quadrupole rods to allow for ion extraction using a downward ramp of the RF voltage. This allowed relatively quick scanning of a broad mass range (1 second scan from 20 -1000 m/z), but produced mass spectral resolution of only five to six. The second method, referred to as "secular scanning", used frequency swept parametric excitation to eject ions between the quadrupole rods. Although the scan rate was 100x slower than the q-scan, a resolution of 800 at m/z 130 was obtained.Lammert et al. have presented preliminary results using a toroida...