Utilizing elliptic weights, we construct an elliptic analogue of rook numbers for Ferrers boards. Our elliptic rook numbers generalize Garsia and Remmel's q-rook numbers by two additional independent parameters a and b, and a nome p. These are shown to satisfy an elliptic extension of a factorization theorem which in the classical case was established by Goldman, Joichi and White and later was extended to the q-case by Garsia and Remmel. We obtain similar results for our elliptic analogues of Garsia and Remmel's q-file numbers for skyline boards. We also provide an elliptic extension of the j-attacking model introduced by Remmel and Wachs. Various applications of our results include elliptic analogues of (generalized) Stirling numbers of the first and second kind, Lah numbers, Abel numbers, and r-restricted versions thereof.