The development of ectomycorrhizal symbiosis leads to drastic changes in gene expression in both partners. However, little is known about the spatial regulation of symbiosis-regulated genes. Using cDNA array profiling, we compared the levels of expression of fungal genes corresponding to approximately 1,200 expressed sequenced tags in the ectomycorrhizal root tips (ECM) and the connected extraradical mycelium (EM) for the Paxillus involutus-Betula pendula ectomycorrhizal association grown on peat in a microcosm system. Sixty-five unique genes were found to be differentially expressed in these two fungal compartments. In ECM, a gene coding for a putative phosphatidylserine decarboxylase (Psd) was up-regulated by 24-fold, while genes coding for urea (Dur3) and spermine (Tpo3) transporters were up-regulated 4.1-and 6.2-fold in EM. Moreover, urea was the major nitrogen compound found in EM by gas chromatography-mass spectrometry analysis. These results suggest that (i) there is a spatial difference in the patterns of fungal gene expression between ECM and EM, (ii) urea and polyamine transporters could facilitate the translocation of nitrogen compounds within the EM network, and (iii) fungal Psd may contribute to membrane remodeling during ectomycorrhiza formation.Soils of temperate forests show both spatial and temporal heterogeneities in nutrient availability, particularly the availability of nitrogen, which is essential for growth processes (50). To access more nutrients, trees have developed a mycorrhizal strategy, in which the expanding mycelium of ectomycorrhizal fungi is able to explore a larger soil volume than the root alone (45). The ectomycorrhizal association is therefore a great advantage for controlling plant nutrient status and growth.The well-characterized structure of Paxillus involutus-Betula pendula ectomycorrhizae (7) is formed by three components: a sheath enclosing the root, an intraradicular network of hyphae, and an outwardly growing system of hyphae, which form essential connections with both the soil and the fruit bodies (50). The ectomycorrhizal mantle provides a structure suitable for nutrient storage and plays a key role in controlling nutrient transfer between the fungus and the plant through its intimate contact with the root surface (35). The extraradical mycelium (EM), which extends from the mantle as single hyphae or linear aggregates of such hyphae, is of additional importance, because these structural attributes form the connection between the mantle and the soil and thus provide pathways for nutrient exchange (41). The positive effect of ectomycorrhizal fungi on plant nutrition could be attributed largely to the activity of EM. The ability of P. involutus to take up and transfer nitrogen compounds to its host, B. pendula Roth, was demonstrated by 15