Immunoglobulin G
(IgG) glycosylation critically modulates antibody
effector functions.
Streptococcus pyogenes
secretes
a unique endo-β-
N
-acetylglucosaminidase, EndoS2,
which deglycosylates the conserved
N
-linked glycan
at Asn297 on IgG Fc to eliminate its effector functions and evade
the immune system. EndoS2 and specific point mutants have been used
to chemoenzymatically synthesize antibodies with customizable glycosylation
for gain of functions. EndoS2 is useful in these schemes because it
accommodates a broad range of
N
-glycans, including
high-mannose, complex, and hybrid types; however, its mechanism of
substrate recognition is poorly understood. We present crystal structures
of EndoS2 alone and bound to complex and high-mannose glycans; the
broad
N
-glycan specificity is governed by critical
loops that shape the binding site of EndoS2. Furthermore, hydrolytic
experiments, domain-swap chimeras, and hydrogen–deuterium exchange
mass spectrometry reveal the importance of the carbohydrate-binding
module in the mechanism of IgG recognition by EndoS2, providing insights
into engineering enzymes to catalyze customizable glycosylation reactions.