Calcification of the medial layer, inducing arterial stiffness, contributes significantly to cardiovascular mortality in patients with chronic kidney disease (CKD). Extracellular nucleotides block the mineralization of arteries by binding to purinergic receptors including the P2Y2 receptor. This study investigates whether deletion of the P2Y2 receptor influences the development of arterial media calcification in CKD mice. Animals were divided into: (i) wild type mice with normal renal function (control diet) (n = 8), (ii) P2Y2R−/− mice with normal renal function (n = 8), (iii) wild type mice with CKD (n = 27), and (iv) P2Y2R−/− mice with CKD (n = 22). To induce CKD, animals received an alternating (0.2–0.3%) adenine diet for 7 weeks. All CKD groups developed a similar degree of chronic renal failure as reflected by high serum creatinine and phosphorus levels. Also, the presence of CKD induced calcification in the heart and medial layer of the aortic wall. However, deletion of the P2Y2 receptor makes CKD mice more susceptible to the development of calcification in the heart and aorta (aortic calcium scores (median ± IQR), CKD‐wild type: 0.34 ± 4.3 mg calcium/g wet tissue and CKD‐P2Y2R−/−: 4.0 ± 13.2 mg calcium/g wet tissue). As indicated by serum and aortic mRNA markers, this P2Y2R−/− mediated increase in CKD‐related arterial media calcification was associated with an elevation of calcification stimulators, including alkaline phosphatase and inflammatory molecules interleukin‐6 and lipocalin 2. The P2Y2 receptor should be considered as an interesting therapeutic target for tackling CKD‐related arterial media calcification.