“…For instance, we observed upregulation of EZH2 in liver cancer samples with a mutation in the predicted distal enhancers of the EZH2 gene, which is known to promote hepatocellular carcinoma (HCC) progression and metastasis ( 43 , 44 ) and its inhibitors are currently being tested in clinical trials ( 45 ). Other examples of genes upregulated in the mutated samples include: (i) STOML2 (liver), which promotes colony formation, migration and invasion of HCC cells ( 46 ) and its downregulation leads to increased sensitivity to lenvatinib ( 47 ), (ii) PLAU (lung), which is a key component of the long-known oncogenic plasminogen activator system important in lung tumour progression, proliferation and metastasis ( 48 ), is being tested as a drug target ( 49 ), and is overexpressed in progressive lung cancer ( 50 ), (iii) CCND1 (lung), a druggable gene ( 51 ) known to promote lung cancer growth and metastasis ( 52 ), (iv) IER1 (colorectal cancer), the deficiency of which protects against colorectal cancer in mice ( 53 ), (v) IKBKB (colorectal cancer), which promotes carcinogenesis via activation of Wnt signalling and production of pro-inflammatory intestinal microenvironment ( 54 ), (vi) PARP2 (pancreas), an important therapeutic target ( 55 ), (vii) BCAR1 (p130Cas; in ovary) a well-known oncogene in ovarian cancer ( 56 ), which confers resistance to anti-angiogenesis therapy in ovarian tumours ( 57 ), (viii) PRKACA (breast), an anti-apoptotic oncogene mediating resistance to HER2-targeted breast-cancer therapy ( 58 ), (ix) CKS1B (breast), anti-apoptotic pro-invasive oncogene in breast cancer ( 59 ) and a drug resistance-inducing gene ( 60 ), and many others ( Supplementary Table S3 ).…”