Clostridium perfringens is a notable colonizer of the human gastrointestinal tract. This bacterium is quite remarkable for a human pathogen by the number of glycoside hydrolases found in its genome. The modularity of these enzymes is striking as is the frequent occurrence of modules having amino acid sequence identity with family 32 carbohydrate-binding modules (CBMs), often referred to as F5/8 domains. Here we report the properties of family 32 CBMs from a C. perfringens N-acetyl--hexosaminidase. Macroarray, UV difference, and isothermal titration calorimetry binding studies indicate a preference for the disaccharide LacNAc (-D-galactosyl-1,4--D-N-acetylglucosamine). The molecular details of the interaction of this CBM with galactose, LacNAc, and the type II blood group H-trisaccharide are revealed by x-ray crystallographic studies at resolutions of 1.49, 2.4, and 2.3 Å , respectively.Clostridium perfringens is a Gram-positive, spore-forming, non-motile, rod-shaped anaerobe. As a pathogen of humans, C. perfringens is often associated with gas gangrene, necrotic enteritis, and, most commonly, food poisoning (1-3). Determination of the genome sequence of C. perfringens (strain 13) (4) has revealed at least 54 open reading frames encoding putative glycoside hydrolases falling into 24 known glycoside hydrolase families (see afmb.cnrs-mrs.fr/CAZY/index.html) (5). Many encode intracellular proteins likely involved in the latter stages of sugar metabolism or proteins involved in peptidoglycan remodeling; however, roughly one-half are predicted to be secreted and are likely involved in the early stages of sugar metabolism. Although C. perfringens is most frequently thought of as a "flesh-eater," its most common niche in humans is the gastrointestinal tract. However, very few, if any, of the secreted glycoside hydrolases have predicted substrate specificities consistent with metabolism of dietary polysaccharides in the human gut making gastric mucins, highly hydrated glycoproteins comprising up to 80% carbohydrate, the most likely target of the secreted C. perfringens enzymes. Indeed, the majority of these enzymes are predicted to have specificities appropriate for the degradation of complex glycans, suggesting that this bacterium is well equipped to attack the diverse sugar structures of the mucins in this environment. Consistent with this is the mucosal necrosis associated with severe enteritis caused by C. perfringens (6), which may be in part due to the arsenal of C. perfringens glycoside hydrolases. In turn, breaking down the mucosal barrier could improve access of other toxins, such as the pore-forming cpe (C. perfringens enterotoxin), to the epithelial layer.Thirteen of the predicted C. perfringens (strain 13) glycoside hydrolases (and notably 13 glycoside hydrolases for each of the sequenced Bacteroides sp. genomes (thetaiotaomicron, fragilis YCH46, and fragilis 25285)) are highly modular and have, in addition to catalytic domains, modules with amino acid sequence identity to family 32 carbohydratebinding mod...