“…The positions of all DNA and water atoms are held constant, as the time scales for these simulations (0.27–3.38 fs, depending on projectile ion velocity) are too short for any notable nuclear motion . The projectile ion is moved at a constant velocity of interest for obtaining the velocity-dependent electronic stopping power curve. , The electronic stopping power, or the energy transfer rate from the projectile ion to target, is a crucial property for many applications, including beam cancer therapy. − As the projectile ion travels through the simulation cell, the electron density changes in response to the time-dependent potential generated by the projectile ion until the ion reaches the end of its trajectory, and the simulation is stopped. By moving the projectile at a constant velocity, while all other atoms are held in place, the total energy of the nonequilibrium simulation is not conserved, as work is done throughout by the projectile ion. ,, Therefore, changes in the total energy of the system can be used to calculate the electronic stopping power as a function of the projectile ion velocity (see Figures S4 and S5 for details) …”