Engineering CREB‐activated promoters for adenosine‐induced gene expression

Abstract

Accumulation of the ribonucleoside, adenosine (ADO), triggers a cAMP response element binding protein (CREB)‐mediated signaling pathway to suppress the function of immune cells in tumors. Here, we describe a collection of CREB‐activated promoters that allow for strong and tunable ADO‐induced gene expression in human cells. By optimizing number of CREB transcription factor binding sites and altering the core promoter region of CREB‐based hybrid promoters, we created synthetic constructs that drive gene expression to higher levels than strong, endogenous mammalian promoters in the presence of ADO. These synthetic promoters are induced up to 47‐fold by ADO, with minimal expression in their “off” state. We further determine that our CREB‐based promoters are activated by other compounds that act as signaling analogs, and that combinatorial addition of ADO and these compounds has a synergistic impact on gene expression. Surprisingly, we also detail how background ADO degradation caused by the common cell culture media additive, fetal bovine serum (FBS), confounds experiments designed to determine ADO dose‐responsiveness. We show that only after long‐term heat deactivation of FBS can our synthetic promoters enable gene expression induction at physiologically relevant levels of ADO. Finally, we demonstrate that the strength of a CREB‐based promoter is enhanced by incorporating other transcription factor binding sites.