2023
DOI: 10.1021/acssynbio.3c00371
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Engineering the Maize Root Microbiome: A Rapid MoClo Toolkit and Identification of Potential Bacterial Chassis for Studying Plant–Microbe Interactions

John van Schaik,
Zidan Li,
John Cheadle
et al.

Abstract: Sustainably enhancing crop production is a global necessity to meet the escalating demand for staple crops while sustainably managing their associated carbon/nitrogen inputs. Leveraging plant-associated microbiomes is a promising avenue for addressing this demand. However, studying these communities and engineering them for sustainable enhancement of crop production have remained a challenge due to limited genetic tools and methods. In this work, we detail the development of the Maize Root Microbiome ToolKit (… Show more

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“…First, this method relies on E. coli cells as the host organism for the functional metagenomic library and therefore is subject to potential limits on what metagenomic genes can be successfully expressed by this host 47 . In theory this can be surmounted using alternative hosts 4850 , and the added efficiency of METa assembly may be more important when using strains with lower transformation efficiency than commercial E. coli strains. Second, there are potentially diminishing returns to preparing smaller functional metagenomic libraries even if their preparation efficiency increases.…”
Section: Discussionmentioning
confidence: 99%
“…First, this method relies on E. coli cells as the host organism for the functional metagenomic library and therefore is subject to potential limits on what metagenomic genes can be successfully expressed by this host 47 . In theory this can be surmounted using alternative hosts 4850 , and the added efficiency of METa assembly may be more important when using strains with lower transformation efficiency than commercial E. coli strains. Second, there are potentially diminishing returns to preparing smaller functional metagenomic libraries even if their preparation efficiency increases.…”
Section: Discussionmentioning
confidence: 99%