Free
ammonia (FA) has been recently demonstrated as the primary
stress factor suppressing microalgal activities in high-ammonium wastewater.
However, its inhibition mechanism and microalgal self-adaptive regulations
remain unknown. This study revealed an initial inhibition and subsequent
self-adaptation of a wastewater-indigenous Chlorella sp. exposed to FA shock. Mutual physiological and transcriptome
analysis indicated that genetic information processing, photosynthesis,
and nutrient metabolism were the most influenced metabolic processes.
Specifically, for the inhibition behavior, DNA damage was indicated
by the significantly up-regulated related genes, leading to the activation
of cell cycle checkpoints, programmed apoptosis, and suppressed microalgal
growth; FA shock inhibited the photosynthetic activities including
both light and dark reactions and photoprotection through non-photochemical
quenching; ammonium uptake was also suppressed with the inhibited
glutamine synthetase/glutamine α-oxoglutarate aminotransferase
cycle and the inactivated glutamate dehydrogenase pathway. With respect
to microalgal self-adaptation, DNA damage possibly enhanced overall
cell viability through reprogramming the cell fate; recovered nutrient
uptake provided substances for self-adaptation activities including
amino acid biosynthesis, energy production and storage, and genetic
information processing; elevated light reactions further promoted
self-adaptation through photodamage repair, photoprotection, and antioxidant
systems. These findings enrich our knowledge of microalgal molecular
responses to FA shock, facilitating the development of engineering
optimization strategies for the microalgal wastewater bioremediation
system.