In this research, an innovative state space-based Transformer model is proposed to address the challenges of complex system prediction tasks. By integrating state space theory, the model aims to enhance the capability to capture dynamic changes in complex data, thereby improving the accuracy and robustness of prediction tasks. Extensive experimental validations were conducted on three representative tasks, including legal case judgment, legal case translation, and financial data analysis to assess the performance and application potential of the model. The experimental results demonstrate significant performance improvements of the proposed model over traditional Transformer models and other advanced variants such as Bidirectional Encoder Representation from Transformers (BERT) and Finsformer across all evaluated tasks. Specifically, in the task of legal case judgment, the proposed model exhibited a precision of 0.93, a recall of 0.90, and an accuracy of 0.91, significantly surpassing the traditional Transformer model (with precision of 0.78, recall of 0.73, accuracy of 0.76) and performances of other comparative models. In the task of legal case translation, the precision of the proposed model reached 0.95, with a recall of 0.91 and an accuracy of 0.93, also outperforming other models. Likewise, in the task of financial data analysis, the proposed model also demonstrated excellent performance, with a precision of 0.94, recall of 0.90, and accuracy of 0.92. The state space-based Transformer model proposed not only theoretically expands the research boundaries of deep learning models in complex system prediction but also validates its efficiency and broad application prospects through experiments. These achievements provide new insights and directions for future research and development of deep learning models, especially in tasks requiring the understanding and prediction of complex system dynamics.