Flow-dependent fish specialists require specific conditions for reproduction, so the success and reproductive intensity of these animals are determined by the flood regime. Thus, this study investigated the spatial and temporal reproductive patterns of fish, especially migratory Prochilodus species (flow-dependent specialists) in an unusual period of low flow in the Pará River sub-basin, one of the main tributaries of the upper São Francisco River. For this, ichthyoplankton collections were carried out between November 2013 and February 2014. Data were analysed considering the spatial and temporal variations in density of eggs and larvae for the upper, middle, and lower portions of the Pará River sub-basin, and correlating this to some environmental variables. The results showed that the small headwater stretch of the Pará River is one relevant spawning area for migratory fish species. However, this area is isolated by the Cajuru reservoir, which makes it uncertain the recruitment of these embryos, due to interruption of natural drift between spawning/nursery areas caused for reservoirs.Larvae of newly hatched migratory species found in tributaries of the lower Pará River sub-basin also indicate these species use these tributaries as spawning grounds and migratory routes. The period in which the research was conducted represented the most atypical low flow, one in the last 75 years, resulting in the low variability in the environmental parameters. Although few parameters increased briefly in this low flow period influenced by greater rainfall in December, this precipitation was possibly responsible for the final gonadal maturation and spawning of migratory species.