The establishment of marine protected areas (MPAs) is an important method to ensure marine protection. To protect and conserve global marine biodiversity, with the adoption of the “Kunming-Montreal Global Biodiversity Framework” during the 15th meeting of the Conference of the Parties of Convention on Biodiversity (CBD) in December 2022, the establishment of an effectively managed MPA network by 2030 and the protection of 30% of the world’s oceans will be common goals for all countries party to the CBD over the next decade. Based on the distribution of over 150 types of marine species, habitats, ecosystems, and abiotic elements, ArcGIS10.5 and Zonation are used in this study to calculate the marine protection priority levels of coastal, nearshore, open ocean, and deep ocean trench areas, and a plan to reach the “30 by 30” targets is proposed. The suggestions for scientifically identifying and managing MPAs are as follows: first, improve MPA planning and establish a well-connected MPA network in national jurisdictions, then conduct scientific marine investigations to obtain background data on MPA establishment and delimitation.