A genetic approach was used for the cloning of the Synechococcus sp. strain PCC 7942 (Synechococcus strain R2) gnd gene which encodes 6-phosphogluconate dehydrogenase (6PGD). A restriction map of the gnd locus was prepared by Southern analysis using the Escherichia coli gene as a heterologous probe. The Synechococcus strain R2 gene was genetically tagged by restriction site-specific insertion of the nptIl gene of Tn9O3 into a pUC19 plasmid library of Synechococcus strain R2 chromosomal DNA. Synechococcus strain R2 was transformed with this insertion mutation library, and isolates carrying the gnd::nptll gene were identified as mutants hypersensitive to incubation in the dark. The interrupted gene was cloned from one of the mutants. A plasmid carrying the gnd::nptlI gene was reintroduced into Synechococcus strain R2, and kanamycinresistant transformants were selected. Transformants arising by gene replacement were dark sensitive and missing 6PGD activity. Transformants arising by plasmid insertion were dark resistant and had 6PGD activity. The wild-type gene was then cloned from a transformant containing a plasmid insertion, making use of the restriction map derived from the interrupted gene. Synechococcus strain R2 6PGD was expressed in E. coli when the cloned gnd gene was transcribed from the lacZ promoter resident on the vector. The boundaries of the gene and the direction of transcription were determined from the phenotypes conferred by plasmids carrying deletions entering gnd from either end. The nucleotide sequence was determined. The deduced amino acid sequence of Synechococcus strain R2 6PGD has 56% homology to that of the E. coli K-12 enzyme.Photosynthetic organisms encounter diurnal periods of darkness, an energy starvation condition. Therefore, mechanisms have evolved to provide them with energy needed for maintaining cellular functions during periods of light deprevation. Cyanobacteria store glycogen during periods of active photosynthesis and use the glycogen as a carbon and energy source during periods of light-energy limitation (17). The primary pathway for the dissimilation of this stored glycogen is the hexose monophosphate shunt (for a review, see reference 24). In nitrogen-fixing cyanobacteria, the hexose monophosphate shunt serves as a major source of reductant for nitrogen fixation (7,11).Despite the central role that the hexose monophosphate shunt plays in cyanobacterial metabolism, little is known about the mechanisms that regulate the level of enzyme activity. As a step toward characterizing these mechanisms, we have developed a method for genetically tagging and cloning the Synechococcus sp. strain PCC 7942 (formerly Anacystis nidulans R2 and here abbreviated as Synechococcus strain R2) gnd gene, which encodes 6-phosphogluconate dehydrogenase (6PGD), the third enzyme of the hexose monophosphate shunt. The level of this enzyme is higher in cells growing slowly in light-or C02-limited chemostats (15) and increases as exponentially growing cells make the transition into the stationary phase ...