Hypoxia inducible factors (HIF1, 2 and 3), consisting of a and b subunits, play an essential role in various responses to hypoxia. Nuclear entry of a subunits is a necessary step for the formation of DNA-binding complex with b subunit, which is constitutively localized in the nucleus. We show here that the nuclear accumulation of HIF2a induced by hypoxia is mediated through a novel variant of bipartite-type nuclear localization signal (NLS) in the C-terminus of the protein, which has an unusual length of spacer sequence between two adjacent basic domains. We further show that when the ubiquitin-proteasome system was de®cient or inhibited, HIF2a accumulated in the nucleus even under normoxia, also mediated through the bipartite NLS. These ®ndings indicate that the protein stability is critical for the nuclear localization of HIF2a and hypoxia is not a necessary factor for the process. Importantly, the NLS of HIF2a is also conserved in the other HIF family members, HIF1a and HIF3a. Mutational analyses proved that the NLS mediating the nuclear localization of HIF1a is indeed bipartite-, but not monopartite-type as thought before. Our results suggest that the newly identi®ed NLS is crucial for the functional regulation of HIF family.