Streptococcus mitis bv. 1 is a pioneer colonizer of the human oral cavity. Studies of its population dynamics within parents and their infants and within neonates have shown extensive diversity within and between subjects. We examined the genetic diversity and clonal turnover of S. mitis bv. 1 isolated from the cheeks, tongue, and primary incisors of four infants from birth to 1 year of age. In addition, we compared the clonotypes of S. mitis bv. 1 isolated from their mothers' saliva collected in parallel to determine whether the mother was the origin of the clones colonizing her infant. Of 859 isolates obtained from the infants, 568 were unique clones. Each of the surfaces examined, whether shedding or nonshedding, displayed the same degree of diversity. Among the four infants it was rare to detect the same clone colonizing more than one surface at a given visit. There was little evidence for persistence of clones, but when clones were isolated on multiple visits they were not always found on the same surface. A similar degree of clonal diversity of S. mitis bv. 1 was observed in the mothers' saliva as in their infants' mouths. Clones common to both infant and mothers' saliva were found infrequently suggesting that this is not the origin of the infants' clones. It is unclear whether mucosal immunity exerts the environmental pressure driving the genetic diversity and clonal turnover of S. mitis bv. 1, which may be mechanisms employed by this bacterium to evade immune elimination.Streptococcus mitis bv. 1, S. oralis and S. salivarius are species of viridans streptococci that are pioneer colonizers of the human oral cavity and remain numerically significant throughout life (17,23,32). However, the origin of these bacteria remains to be determined. Despite the abundance of commensal bacteria present in the birth canal, none of these are able to successfully colonize the mouth of the infant suggesting that they do not have tropism for the oropharyngeal mucosa. It has been proposed that commensal bacteria are transferred from the primary care-giver (27,29,33,42), external environment (6), and from other areas of the respiratory tract (22,23).Successful colonization depends on the ability of the bacteria to circumvent host innate and acquired immunity in order that they can adhere to oral surfaces and avoid removal via the flushing action of saliva and mastication. Neonatal saliva has been shown to contain secretory immunoglobulin A (SIgA) antibodies that react with these bacteria (9, 10) but these antibodies appear insufficient to completely block adherence and subsequent colonization. Several species of viridans streptococci including the pioneers, S. mitis bv. 1 and S. oralis, produce IgA1 protease (11, 26) which may inactivate SIgA1 antibodies in saliva. In this context, it is interesting that over 90% of SIgA in the saliva of neonates belongs to subclass 1 (16). Furthermore, viridans streptococci elaborate extracellular polysaccharide (4) and bind salivary macromolecules (40) which may mask them from host immunit...