Methane monooxygenase from Methylobacterium sp. strain CRL-26 which catalyzes the oxygenation of hydrocarbons was resolved into two components, a hydroxylase and a flavoprotein. An anaerobic procedure was developed for the purification of the hydroxylase to homogeneity. The molecular weight of the hydroxylase as determined by gel filtration was 220,000, and that determined by sedimentation equilibrium analysis was about 225,000. The purified hydroxylase contained three nonidentical subunits with molecular weights of about 55,000, 40,000, and 20,000, in equal amounts as judged by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, indicating that it is an a272'y2 protein. Optical absorption spectra revealed peaks near 408 and 280 nm, and fluorescence spectra revealed emission peaks at 490 and 630 nm. The purified hydroxylase contained 2.8 ± 0.2 mol of iron and 0.5 ± 0.1 mol of zinc per mol of protein but negligible amounts of acid-labile sulfide. The antisera prepared against the hydroxylase showed cross-reactivity with hydroxylase components in soluble extracts from other methanotrophs.Methanotrophs, organisms capable of utilizing methane as their sole source of carbon and energy, oxidize methane to carbon dioxide via methanol, formaldehyde, and formate. Higgins and Quayle (14) have presented evidence for an oxygenase step in the utilization of methane by showing that the oxygen in the methanol excreted by cell suspensions of Methanomonas methanooxidans and Pseudomonas methanica is derived exclusively from 1802 and not from water. The role of NADH in the reaction was inferred when oxidation and oxygen consumption catalyzed by the particulate fractions of various methane-utilizing bacteria (10,21,22,27) correlated with NADH oxidation. Tonge et al. (27) partially purified the methane monooxygenase system from particulate fractions derived from the obligate methane-utilizing bacterium Methylosinus trichosporium OB3b, and they concluded that three components are required for activity. Also, Colby et al. (5)(6)(7)(8) and Dalton (9) have described a multicomponent soluble methane monooxygenase from a strain of Methylococcus capsulatus (Bath). Recently we reported that a variety of hydrocarbons are oxidized by cell-free preparations of Methylobacterium sp. strain . We have resolved methane monooxygenase into two components, a hydroxylase and a flavoprotein. This report describes the purification and properties of the hydroxylase component.The methane-utilizing organism Methylobacterium sp. strain CRL-26 was isolated from soil samples by enrichment culture with methane as a carbon source, as described previously (20). The organism was maintained at 30°C on agar plates containing mineral salts (11) in a dessicator under an atmosphere of methane and air (1:1, vol/vol). Strain CRL-26 was grown on methane at 300C in 4.0-liter flasks containing 1 liter of mineral salts medium (11) A600 of 0.5. A gas mixture of 25% methane (containing 2 to 5% carbon dioxide) and 75% air was continuously sparged through the fermentor ...