The Barents Sea region is influenced by an increased inflow of warm Atlantic water, which impacts all components of the local ecosystem. Information on the state of benthic communities is required to predict alterations in the food web’s structure and functioning. The spatial distribution of polychaete communities was investigated in relation to environmental conditions at nine stations along the Kola Transect (70°00′–74°00′ N, 33°30′ E) in April 2019. A taxonomically diverse fauna containing 114 taxa was found, with 95 identified at the species level. The fauna was composed predominantly of boreo-Arctic species (63%), followed by boreal (22%) and Arctic species (13%). The polychaete abundance and biomass exhibited considerable variability, ranging from 910 to 3546 ind. m−2 and from 3.4 to 72.7 g m−2, with average values of 1900 ind. m−2 and 18.7 g m−2, respectively. Cluster analysis revealed three distinct polychaete communities differing in dominant species composition, abundance, and biomass. The southern region featured the most abundant community, the middle part exhibited the highest diversity, and the northern area presented the community with the highest biomass. These spatial variations in community structure corresponded closely to the distribution and properties of water masses within the study area. Multivariate analysis identified depth as the primary driver of diversity indices, with higher values observed at shallow water sites. Salinity and water temperature together explained 46% of the variation in abundance, reflecting warming effects and showing positive or negative effects, depending on the taxa. Furthermore, an increase in water temperature had a positive impact on the contribution of boreal species to the total material, while exerting a strong negative effect on the overall community biomass, underscoring the potential of polychaetes in biological indication.