Armillaria root disease is one of the most damaging timber and fruit tree diseases in the world. Despite its economic importance, many basic questions about the biology of the causal fungi, Armillaria spp., are unanswered. For example, Armillaria undergoes matings between diploid and haploid mycelia, which can result in a recombinant diploid without meiosis. Evidence of such somatic recombination in natural populations suggests that this reproductive mode may affect the pathogen's ecology. Investigations of the mechanisms and adaptive consequences of somatic recombination are, however, hampered by the lack of a method to reliably synthesize somatic recombinants. Here we report the first genetic transformation system for the genus Armillaria. We transformed A. mellea with selective markers for use in diploid-haploid matings to reliably synthesize somatic recombinants. This was accomplished with Agrobacterium tumefaciens carrying pBGgHg, which carries the hygromycin phosphotransferase gene (hph). hph was integrated into transformants, as evidenced by serial transfer to selective media, PCR, reverse transcription-PCR (RT-PCR), and Southern hybridization. Nuclear and mitochondrial markers were developed to genotype synthesized mycelia. In matings between a wild-type diploid and hygromycin-resistant haploids (transgenic), we identified recombinant, hygromycin-resistant diploids and, additionally, hygromycin-resistant triploids, all with the mitochondrial haplotype of the haploid partner. Our approach created no mycelium in which the haploid nucleus was replaced by the diploid nucleus, the typical outcome of diploid-haploid matings in Armillaria. This genetic transformation system, in combination with new markers to track chromosomal and cytoplasmic inheritance in A. mellea, will advance research aimed at characterizing the significance of somatic recombination in the ecology of this important fungus.Fungi have evolved various mechanisms of shuffling genetic material, which can occur in the absence of fruiting and meiosis. Among homobasidiomycetes in which the predominant vegetative stage is dikaryotic (e.g., Schizophyllum commune), the two nuclei per cell of a dikaryotic mycelium can exchange DNA within the mycelium to create a new dikaryotic genotype independent of basidiome formation (15). A dikaryotic mycelium can also mate with a monokaryon, the latter originating from a single spore, and subsequent nuclear migration of one of the dikaryon's two nuclei into the monokaryotic mycelium can create a new dikaryotic genotype (e.g., Heterobasidion annosum [44]). Such examples of somatic recombination/reassortment were concomitant with successful phenotypic adaptations for the new dikaryons, namely, improved tolerance of extreme environments.In the homobasidiomycete Armillaria mellea (the causal agent of Armillaria root disease), the predominant vegetative stage is diploid. Diploid and haploid mycelia can mate to form a recombinant diploid mycelium (12), although the mechanism by which this occurs is not known. Nonethele...