Estimating quality of archive urban stream macroinvertebrate samples for genomic, transcriptomic and proteomic assessment

Begić, Valerija; Perić, Mirela Sertić; Hančić, Suzana; Štargl, Mihaela; Svoboda, Matea; Korać, Petra; Radanović, Ines

doi:10.1016/j.ecolind.2021.107509

Cited by 4 publications

(2 citation statements)

References 39 publications

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“…The Odonata order falls between these two groups in the intermediate size range [110]. Comparative genomics has detected the functional similarities between non-model and model (most sensitive or bioindicator) species within ecotoxicological biomonitoring routines to identify toxicity pathways and novel molecular biomarkers in species that have not been defined yet [79]. However, there is a dramatic lack of data on freshwater organisms in digital repositories, such as the genomes of aquatic insects, limiting research progress in the field at both fundamental and applied scales [77].…”

Section: Genomicsmentioning

confidence: 99%

“…Omics are a cornerstone analysis of the effects of human stressors on freshwater ecosystems, mainly at the molecular level. This corresponds to an indirect inference for the most important objectives of biomonitoring studies [79]. Related to metagenomics and genomics, affordable methods are utilized for biomonitoring.…”

Section: Omics In Freshwater Biomonitoring: a Multifaceted Frameworkmentioning

confidence: 99%

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Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring

Machuca-Sepúlveda

Miranda

Lefin

et al. 2023

Biology

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Freshwater ecosystems have been experiencing various forms of threats, mainly since the last century. The severity of this adverse scenario presents unprecedented challenges to human health, water supply, agriculture, forestry, ecological systems, and biodiversity, among other areas. Despite the progress made in various biomonitoring techniques tailored to specific countries and biotic communities, significant constraints exist, particularly in assessing and quantifying biodiversity and its interplay with detrimental factors. Incorporating modern techniques into biomonitoring methodologies presents a challenging topic with multiple perspectives and assertions. This review aims to present a comprehensive overview of the contemporary advancements in freshwater biomonitoring, specifically by utilizing omics methodologies such as genomics, metagenomics, transcriptomics, proteomics, metabolomics, and multi-omics. The present study aims to elucidate the rationale behind the imperative need for modernization in this field. This will be achieved by presenting case studies, examining the diverse range of organisms that have been studied, and evaluating the potential benefits and drawbacks associated with the utilization of these methodologies. The utilization of advanced high-throughput bioinformatics techniques represents a sophisticated approach that necessitates a significant departure from the conventional practices of contemporary freshwater biomonitoring. The significant contributions of omics techniques in the context of biological quality elements (BQEs) and their interpretations in ecological problems are crucial for biomonitoring programs. Such contributions are primarily attributed to the previously overlooked identification of interactions between different levels of biological organization and their responses, isolated and combined, to specific critical conditions.

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Section: Genomicsmentioning

confidence: 99%

Section: Omics In Freshwater Biomonitoring: a Multifaceted Frameworkmentioning

confidence: 99%

Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring

Machuca-Sepúlveda

Miranda

Lefin

et al. 2023

Biology

View full text Add to dashboard Cite

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Effectiveness of five different solutions for preserving aquatic insects commonly used in morphological and stream ecology studies

et al. 2022

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Assessment of water quality using benthic diatom and macroinvertebrate assemblages: A case study in an East China canal

Jin,

Lan,

Sun

et al. 2024

Water Biology and Security

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Estimating quality of archive urban stream macroinvertebrate samples for genomic, transcriptomic and proteomic assessment

Cited by 4 publications

References 39 publications

Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring

Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring

Effectiveness of five different solutions for preserving aquatic insects commonly used in morphological and stream ecology studies

Assessment of water quality using benthic diatom and macroinvertebrate assemblages: A case study in an East China canal

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