With the International Maritime Organization's (IMO) International Convention for the Control and Management of Ships' Ballast Water and Sediments now in force, determining abundance and distribution of phytoplankton inside ballast tanks is critical for successful ballast water management, particularly when assessing compliance. The relationship between the abundance and distribution of cells was examined to obtain the best representative sample of the entire phytoplankton community in ballast tanks, comparing three ballast water sampling techniques including in-line, in-tank, and Van Dorn bottle methods. Lloyd's index, D y , and Gini index were applied to compare methods of sample collection and determine representativeness of samples and performance of sampling methods. Phytoplankton abundance trends from live microscopy counts using fluorescein diacetate (FDA) were also compared to those using a FlowCAM on preserved samples. The phytoplankton community showed a patchy distribution inside the ballast tank and this trend was observed across all voyages. The estimated marginal mean analysis showed that in hypothetical conditions (e.g., 702 m 3 of water in ballast tank and phytoplankton whole-tank abundance of 19,522 cells), the difference among the three methods was small. Conversely, statistical analysis performed on empiric abundances using a negative binomial regression model determined that the volume discharged during sampling of ballast water has an effect on the number of cells collected on a given voyage. Results of this study also confirmed that the in-line method may be a better method at collecting phytoplankton samples from ballast tanks than the in-tank or Van Dorn method, regardless of the time at which samples are collected. Finally, the number of living cells and the number of preserved cells showed similar trends for most of the voyages, despite fewer samples analyzed using FDA.