bDisposal of fecally contaminated poultry litter by land application can deliver pathogens and fecal indicator bacteria (FIB) into receiving waters via runoff. While water quality is regulated by FIB enumeration, FIB testing provides inadequate information about contamination source and health risk. This microbial source tracking (MST) study compared the persistence of the Brevibacterium sp. strain LA35 16S rRNA gene (marker) for poultry litter with that of pathogens and FIB under outdoor, environmentally relevant conditions in freshwater, marine water, and sediments over 7 days. Salmonella enterica, Campylobacter jejuni, Campylobacter coli, Bacteroidales, and LA35 were enumerated by quantitative PCR (qPCR), and Enterococcus spp. and E. coli were quantified by culture and qPCR. Unlike the other bacteria, C. jejuni was not detectable after 48 h. Bacterial levels in the water column consistently declined over time and were highly correlated among species. Survival in sediments ranged from a slow decrease over time to growth, particularly in marine microcosms and for Bacteroidales. S. enterica also grew in marine sediments. Linear decay rates in water (k) ranged from ؊0.17 day ؊1 for LA35 to ؊3.12 day ؊1 for C. coli. LA35 levels correlated well with those of other bacteria in the water column but not in sediments. These observations suggest that, particularly in the water column, the fate of LA35 in aquatic environments is similar to that of FIB, C. coli, and Salmonella, supporting the hypothesis that the LA35 marker gene can be a useful tool for evaluating the impact of poultry litter on water quality and human health risk.T he practice of applying poultry litter (bedding contaminated with feces) as fertilizer is the chosen method of disposal of several billion tons of litter per year in the United States (1, 2). Numerous studies have demonstrated the cause-and-effect relationship between land application of poultry litter and contamination of environmental waters and soils due to chemical and microbial pollution from runoff (3-6). The presence of pathogens such as Campylobacter jejuni, Salmonella enterica, and Staphylococcus aureus along with fecal indicator bacteria (FIB) such as enterococci and Escherichia coli in poultry litter is of particular concern from a public health perspective (7-10). The human disease risk associated with contamination of environmental water bodies with human fecal material is unambiguous; in contrast, the risk of disease from nonhuman fecal contamination (from animals and birds) is more variable and host dependent (11).Currently, water body contamination by fecal pollution is assessed by FIB levels. A body of literature has established that fecal coliforms, E. coli, and Enterococcus spp. can persist in environmental waters and in sediments (12-14), indicating the existence of extraintestinal reservoirs of FIB. The ability of enteric pathogens to persist in environmental waters and sediments is much less clear and almost certainly varies by pathogen type and species (13,15). A better ...