Lymphatic filariasis (LF) is an infectious neglected tropical disease caused by a mosquito-borne nematode and is a major cause of disability. In 2022, it was estimated that 51 million people were infected with LF. In Kenya filariasis is endemic along the entire coastal strip. The main vectors are Anopheles funestus and Anopheles gambiae in rural areas and Culex quinquefaciatus mosquitoes in urban areas. In 2022, mosquitoes were collected from Kilifi, Kwale and Taita-Taveta counties which are located within the LF endemic region in Kenya. Subsequently, genomic Deoxyribonucleic acid (DNA) was then extracted from these mosquitoes for speciation and analysis of W. bancrofti infection rates. The impact of sociodemographic and household attributes on infection rates were assessed using generalized estimating equations. A total of 18,121 mosquitoes belonging to Culex (n = 11,414) and Anopheles (n = 6,707) genera were collected. Morphological identification revealed that Anopheline mosquito were dominated by An. funestus (n = 3,045) and An. gambiae (n = 2,873). Wuchereria bancrofti infection rates were highest in Kilifi (35.4%; 95% CI 28%-43.3%, n = 57/161) and lowest in Taita Taveta (5.3%; 95% CI 3.3%-8.0%, n = 22/412). The major vectors incriminated are An. rivulorum, An. funestus sensu stricto and An. arabiensis. The risk of W. bancrofti infection was significantly higher in An. funestus complex (OR = 18.0; 95% CI 1.80180; p = 0.014) compared to An. gambiae (OR = 1.54; 95% CI 0.16-15.10; p = 0.7). Additionally, higher risk was observed in outdoor resting mosquitoes (OR = 1.72; 95% CI 1.06-2.78; p = 0.027) and in homesteads that owned livestock (OR = 2.05; 95% CI 1.11-3.73; p = 0.021). Bednet (OR = 0.39; 95% CI 0.12-1.32; p = 0.13) and poultry ownership (OR = 0.52; 95% CI 0.30-0.89, p = 0.018) seems to provide protection. Anopheles funestus complex emerged as the primary vectors of lymphatic filariasis along the Kenyan coast. These findings also highlight that a significant portion of disease transmission potentially occurs outdoors. Therefore, control measures targeting outdoor resting mosquitoes such as zooprophylaxis, larval source management and attractive sugar baits may have potential for LF transmission reduction.