“…These data were analysed cross-sectionally at both timepoints and also used to construct a longitudinal analysis of gene expression and disease progression. Both of these analyses were then interrogated to identify novel candidate biomarker genes, and to test progressive differential expression of genes identified in previous studies, using publicly available datasets ( Borovecki et al , 2005 ; Runne et al , 2007 ; Lovrecic et al , 2010 ; Hu et al , 2011 ; Krzysztoń-Russjan et al , 2013 ; Träger et al , 2014 ; Cesca et al , 2015 ; Mastrokolias et al , 2015 ; Miller et al , 2016 ; Zadel et al , 2018 ), as well as an independent TRACK-HD sample cohort. Finally, we sought to shed new light on, or to reproduce previous evidence of, molecular mechanisms of Huntington’s disease pathogenesis identified using GSEA ( Hensman Moss et al , 2017 ).…”