Honeysuckle, a traditional Chinese medicine, holds significant medicinal value, making it ubiquitous in the medical field. However, the efficient extraction of chlorogenic acid from Chinese herbal medicine while maintaining its pharmacological activity remains a pressing challenge. To address the issues of environmental pollution and inefficient extraction using traditional solvents, there is a need to develop a novel solvent. Due to their low cost, nontoxic, and environmentally friendly characteristics, deep eutectic solvents can be used for extracting traditional Chinese medicinal materials while preserving the activity of their active ingredients during the extraction process. In this study, we examined the antibacterial activity of chlorogenic acid, a key component of honeysuckle, after extraction using a deep eutectic solvent. We gained preliminary insights into the antibacterial activity of the extract against various bacteria, including Escherichia coli, Staphylococcus aureus, and Pseudomonas aeruginosa. Furthermore, we analyzed the antibacterial activity of extracts of different concentrations in liquid medium, and the morphology of the bacteria after inhibition was analyzed. These findings suggest that deep eutectic solvent (DES) is an efficient, environmentally friendly, and cost‐effective method for extracting the active components of honeysuckle. Moreover, the active components extracted using DES retain robust physiological activity.