The goal of this work was to isolate, identify, and characterize heavy metals degrading bacterial strains from the contaminated Hindon river (Yamuna's tributary) in India. Hindon river water quality was also assessed using physico-chemical and heavy metals analyses, revealing the river's degraded state. The bacterial isolates were isolated from Hindon river. Two bacterial isolates coded as HIB2 and HIB7 were screened and selected for further study based on the resistance to heavy metals (Cd, Ni, and Pb). Finally, these were identified based on morphological, biochemical tests and 16S rRNA sequencing. Biodegradation potential for heavy metals was assessed using inductively coupled plasma mass spectrometry (ICP-MS). The bacterial isolates HIB2 and HIB11 from Hindon river were identified as Bacillus subtilis and Pseudomonas aeruginosa respectively. At 10 mg/L initial concentration, results of biodegradation experiments showed the removal competences of 53.9% for Cd2+ and 68.6% for Ni2+ and 71.7% for Pb2+ using Bacillus subtilis HIB2, where 57.6% for Cd2+ and 66.4% for Ni2+ and 70.7% for Pb2+ using Pseudomonas aeruginosa HIB11 after 14 days of incubation at pH 7.0 and 37°C. Both isolates revealed the similarity in removal efficiency for these three heavy metals. The ability of Bacillus subtilis HIB2 and Pseudomonas aeruginosa HIB11 degrading heavy metals was found to be through curing experiments. The study showed that the Bacillus subtilis HIB2 and Pseudomonas aeruginosa HIB11 could be involved in effective degradation of heavy metals (Cd, Ni, and Pb).