Autoimmune hepatitis (AIH) is an autoimmune liver disease and cirrhosis is sometimes complicated with AIH at diagnosis, influencing its prognosis.
TNFAIP3
gene encodes A20, an inhibitor of nuclear factor-κB pathway, and is a susceptibility gene for autoimmune diseases. We investigated deleterious variants in the coding regions of
TNFAIP3
gene of Japanese AIH patients or those with cirrhosis. The deleterious variants in the coding regions of
TNFAIP3
gene were analyzed by the cycle sequencing method and the frequencies of deleterious
TNFAIP3
alleles of AIH or AIH with cirrhosis were compared with those of Japanese controls. The deleterious alleles in
TNFAIP3
were not associated with AIH. A significant association was shown for the deleterious alleles in
TNFAIP3
(
P
= 0.0180, odds ratio (OR) 4.28, 95% confidence interval (CI) 1.53–11.95) with AIH with cirrhosis at presentation. The serum IgM levels in AIH patients with deleterious alleles in
TNFAIP3
were tended to be lower than those without (
P
= 0.0152,
Q
= 0.1216). The frequency of deleterious alleles in
TNFAIP3
was higher in the AIH subset without the
DRB1
risk alleles than that with (
P
= 0.0052, OR 5.10, 95%CI 1.55–16.74). The deleterious alleles in
TNFAIP3
were associated with AIH with cirrhosis.