Evaluation of the binding ability of a macrobicyclic receptor for anions by potentiometry and molecular dynamics simulations in solution

A highly efficient synthesis of small pseudopeptidic cages from simple precursors has been achieved by the triple S(N)2 reaction between tripodal tris(amido amines) and several 1,3,5-tris(bromomethyl)benzene electrophiles. The success of the macrobicyclization strongly depends on the central triamine scaffold, which dictates the correct preorganization of the intermediates. The chloride binding properties of the protonated pseudopeptidic cages have been studied in the solid state (by X-ray diffraction) as well as in solution (by NMR spectroscopy and ESI-MS) and in the gas phase (by collision-induced dissociation (CID)-MS). The crystal structure of the HCl salts of several cages show a chloride partially or completely caged within the cavity of the macrobicycle. Both the amino acid side chain and the substitution at the aromatic tripodal ring have an effect on the chloride binding ability. The cages derived from the 1,3,5-benzene moiety show low affinity, whereas the triple substitution in the ring (either with Me or Et) increases the chloride binding by one order of magnitude. Besides, the cages derived from aliphatic amino acids display a stronger interaction than those derived from phenylalanine. The basis for the different mode of binding depending on the receptor structure is proposed according to the structural data (X-ray and NMR spectroscopy). Finally, the transport of the chloride anion through lipid bilayers has been studied for selected cages. Despite the important differences in the chloride binding, the transport properties are better correlated with the lipophilicity of the molecules. Therefore, the pseudopeptidic cages sharing the same binding motif for chloride rendered very different interaction and transport properties depending on the peripheral substitution.

Section: Introductionmentioning

confidence: 99%

Tuning Chloride Binding, Encapsulation, and Transport by Peripheral Substitution of Pseudopeptidic Tripodal Small Cages

Martí

Rubio

Bolte

et al. 2012

“…This is commonly done by means of pH titrations using an acid and supporting electrolyte with an anion that does not form a complex with the titrated ligand, or the stability constant of the corresponding complex is sufficiently low (log K 1). [23][24][25][26][27][28][29] The use of an inert anion is necessary because the anion binding process affects the protonation equilibrium, thus changing the pH titration www.chemeurj.org curve [25] ( Figure S20, Supporting Information). A pH-potentiometric titration of the HCl solution with L ( Figure S21) demonstrated that only the central amine nitrogen atom (N2) was protonated in the acidic medium, as was the case in the solid state.…”

Section: Resultsmentioning

confidence: 99%

Anion‐Templated Supramolecular C₃ Assembly for Efficient Inclusion of Charge‐Dispersed Anions into Hydrogen‐Bonded Networks

Užarević¹,

Đilović²,

Bregović³

et al. 2011

The binding properties and conformational adaptability of a known nitrate/sulfate receptor N,N'-3-azapentane-1,5-bis[3-(1-aminoethylidene)-6-methyl-3H-pyran-2,4-dione] (L) toward various charge-dispersed monoanions (HSO(3)(-), ClO(4)(-), IO(4)(-), PF(6)(-), and SbF(6)(-)) are considered. These anions template the folding of three HL(+) species through a self-assembly process into a new hollow supramolecular trication. During the self-assembly, all strong hydrogen-bond donors of the podand become coordinatively saturated by interactions with the oxo functionalities from other HL(+) molecules. In that way, only the weak hydrogen-bond-donating groups in the exterior part of the receptor are accessible for anion binding. The investigated anions are accommodated in the hydrophobic pockets of the isomorphous hydrogen-bonded frameworks, which serve as a basis for selective crystallization from the highly competitive anion/solvent systems. This behavior is discussed in terms of size and geometry of the anions as well as the receptor's coordination capabilities to provide the most favorable surroundings for guest inclusion both in solution and in the solid state.

Recognition of Oxalate by a Copper(II) Polyaza Macrobicyclic Complex

Mateus

Delgado

Brandão

et al. 2011

Self Cite

A new polyamine macrobicyclic compound was synthesised through a [1+1] "tripod-tripod coupling" strategy and using a Schiff base condensation reaction, followed by sodium borohydride reduction. The resulting compound is a heteroditopic cage (btpN(7)) in which one of the head units is appropriate for the coordination of copper(II), whereas the other head is available for additional hydrogen-bonding and electrostatic interactions with substrates. The acid-base behaviour of the new compound, the stability constants of its complex with the Cu(2+) ion and the association constants of the copper(II) cryptate with oxalate (oxa(2-)), malonate (mal(2-)), succinate (suc(2-)), maleate (male(2-)) and fumarate (fum(2-)) were determined by potentiometry at 298.2 K in aqueous solution and at an ionic strength of 0.10 mol dm(-3) in KNO(3). These studies revealed a clear preference of the receptor [CuH(h)btpN(7)H(2)O]((2+h)+) for oxa(2-) over the other dicarboxylate substrates. This arises from co-operativity between metal-anion coordination and electrostatic and hydrogen-bonding interactions, in accordance with the ideal size of this dicarboxylate, which allow it to take full advantage of the potential binding sites of the receptor. A qualitative indicator-displacement study, in agreement with the potentiometric studies, demonstrated that the copper cryptate receptor can be used as a selective visual sensor for oxalate.