Background and objectivesMaize protein lacks essential amino acids such as methionine, lysine and tryptophan. Limited information exists on composition and variation of kernel methionine. This study assessed methionine variability and its relationship with lysine and tryptophan in 48 maize inbreds at three locations.FindingsANOVA revealed significant variation for kernel methionine (0.031‐0.305%), lysine (0.118‐0.389%) and tryptophan (0.014‐0.090%). CML591 (0.305%), CML596 (0.286%) and CML421 (0.284%) showed highest methionine content. Average methionine contents were comparable in QPM (0.156%) and normal (0.150%) lines. Methionine showed no correlation with lysine (r=0.001) and tryptophan (r=0.032), while lysine and tryptophan exhibited a strong positive correlation (r=0.740). CML165 (methionine: 0.272%, lysine: 0.320%, tryptophan: 0.090%), CML186 (methionine: 0.254%, lysine: 0.389%, tryptophan: 0.083%) and HKI163 (methionine: 0.252%, lysine: 0.331%, tryptophan: 0.084%) were the promising genotypes considering all the three amino acids.ConclusionsMulti‐location experiments revealed genetic variation in methionine, lysine and tryptophan among the 48 inbreds. No negative correlation between the amino acids indicates the possibility of developing cultivars high in methionine, lysine and tryptophan.Significance and noveltyIdentified nutrient rich inbreds will serve as valuable germplasm in maize biofortification program. This is the first report on methionine variability and its relationship with lysine and tryptophan in subtropical maize.This article is protected by copyright. All rights reserved.