Water is considered a fundamental factor, and plays a role in public health and economic growth. Therefore, it should be free of all kinds of microorganisms, and chemical substances that are dangerous to fauna and flora. Insufficient water supply is one of the issues confronting Middle Eastern countries, and Lebanon becomes a typical example. The objectives of this study are to assess the fundamental physicochemical and microbiological water properties of eight distinct sites, in the Lebanon southeast, were determined, during the Coronavirus pandemic, and the worst economic situation that hit Lebanon. These tests were carried out by the World Health Organization (WHO). The results were utilized to assess the level of environmental pollution. A comparison between the obtained results with other studies: Lebanon southwest and the northwest region of Jordan Valley. The novelty of this study stems from the fact that it is the first to shed light on the degree of pollution level and the lack of environmental education for water conservation and water pollution prevention in this unstudied area, and compares the results locally and regionally. In addition, the obtained results indicate the impact of the Coronavirus on the behavior of the habitants in this region.