Small heat shock proteins (sHSPs) are a conserved group of molecular chaperones with important roles in cellular proteostasis. Although sHSPs are characterized by their small monomeric weight, they typically assemble into large polydisperse oligomers that vary in both size and shape but are principally composed of dimeric building blocks. These assemblies can comprise different sHSP orthologues, creating additional complexity that may affect chaperone activity. However, the structural and functional properties of such heterooligomers are poorly understood. We became interested in heterooligomer formation between human heat shock protein family B (small) member 1 (HSPB1) and HSPB6, which are both highly expressed in skeletal muscle. When mixed in vitro, these two sHSPs form a polydisperse oligomer array composed solely of heterodimers, suggesting preferential association that is determined at the monomer level. Previously, we have shown that the sHSP Nterminal domains (NTDs), which have a high degree of intrinsic disorder, are essential for the biased formation. Here we employed iterative deletion mapping to elucidate how the NTD of HSPB6 influences its preferential association with HSPB1 and show that this region has multiple roles in this process. First, the highly conserved motif RLFDQxFG is necessary for subunit exchange among oligomers. Second, a site approximately 20 residues downstream of this motif determines the size of the resultant heterooligomers. Third, a region unique to HSPB6 dictates the preferential formation of heterodimers. In conclusion, the disordered NTD of HSPB6 helps regulate the size and stability of heterooligomeric complexes, indicating that terminal sHSP regions define the assembly properties of these proteins.Heat shock proteins are an indispensable group of proteins in charge of maintaining cellular proteostasis. This protein superfamily ensures both N-terminal determinants of HSPB6 heterooliogomerization 2 the correct folding of newly synthesized proteins and prevents unfolding and aggregation under stress conditions (1). Small heat shock proteins (sHSPs) are an important subfamily of this network and capture proteins in the early stages of unfolding, thereby preventing aberrant interactions leading to aggregation (2). sHSPs are capable of binding a wide variety of substrate proteins within the cell, and are considered a first line of defense of the protein quality control network (3-6).Small heat shock proteins are notorious for assembling into large polydisperse complexes, comprised of up to 40 subunits for some members (7-9). These assemblies are formed from dimeric building blocks, where the constituent monomeric subunits can freely exchange (10). Dimer association is mediated by the core structured region of sHSPs, the -crystallin domain (ACD) (11)(12)(13)(14). Crystal structures of the isolated ACD of a number of metazoan sHSPs show a 7-strandedsandwich that readily assembles into dimers via anti-parallel pairing of the 7-strand (15-17). Within this kingdom higher orde...