There is a major unsolved question in modern cell biology: how does a cell convey environmental information (receptor inputs) into adaptive behavioral programs (motility, gene expression, etc.) (Bray, 1995). A single cell has hundreds of different types of receptor proteins on its surface, making complex combinatorial relationships possible between signaling inputs and signaling network behavior. It remains largely unclear how different combinations of receptor signaling inputs are differentially recognized by the signaling network in such a way as to trigger execution of particular cellular events, such as gene transcription or cytoskeletal rearrangement. Signaling pathways downstream of different receptors are known to crosstalk at many levels and to converge at a limited number of signaling targets. A complex network of signaling pathways mediates the regulatory effects of neurotrophic factors (NTFs) and extracellular matrix (ECM) molecules on a wide spectrum of processes in neurons, including synaptic transmission, axonal growth and posttraumatic regeneration. Many signaling elements of those pathways have been characterized and activatory or inhibitory effects of particular elements on cell function have been described. At the same time, the integral functioning of the signaling network is just beginning to be addressed. It remains largely unclear how distinct pathways are orchestrated in the integrated network to produce highly specific cell responses to receptor stimulation.A critical obstacle to progress in our understanding of cell signaling networks is the lack of a standard unambiguous language allowing quantitative description and analysis of the network behavior (Lazebnik, 2002). The formalism of Boolean algebra was previously used to analyze a genetic network in the specific case of the bacteriophage lambda lysis-lysogeny decision (McAdams and Shapiro, 1995) and it was theoretically predicted that protein kinase signaling networks can be described in Boolean terms (Bhalla, 2003;Bray, 1995;Huang and Ingber, 2000). Moreover, signaling molecules with particular gating behaviors have been generated by means of protein domain recombination (Dueber et al., 2003;Dueber et al., 2004). In the present work, we considered a Boolean network formalism as a framework for experimental design and the interpretation of experimental data on a signaling network behavior.ECM molecules and NTFs are two classes of extracellular ligands that have crucial effects of axonal growth both in vivo and in vitro (Cai et al., 1999;Chen and Strickland, 2003;Ramer et al., 2000). Treatment with NTFs -especially nerve growth factor (NGF) and glial-cell-line-derived neurotrophic factor (GDNF) -is the only known way to induce axonal regeneration into the root entry zone of the spinal cord after dorsal root avulsion (Ramer et al., 2000;Schwab, 2000). GDNF also promotes axonal regeneration in propriospinal neurons after spinal cord injury (Iannotti et al., 2003). Neurturin (NRTN), which is a close homolog of GDNF, restores hindlimb cutan...