Producing viable gametes among metazoans relies on generally conserved genetic machinery. We have previously shown that DNA methyltransferase I (Dnmt1) plays an important role for both male and female gametogenesis in insects. In this study, we tested the hypothesis that Dmnt1 influences meiosis, a prediction from previous studies that suggested this is where gametogenesis is being perturbed. We used RNAi to reduce the gene expression of Dnmt1 within the whitefly Bemisia tabaci, a Hemipteran species that relies on Dnmt1 for proper gametogenesis. We then used RNA-seq to test an a priori hypothesis that meiosis related molecular pathways would be perturbed. This was done by comparing Dnmt1 RNAi and control samples. We generally did not find an overall effect on meiosis genes. However, we found that genes in the Wnt pathway, genes associated with the entry into meiosis in vertebrates, were differentially expressed when Dnmt1 expression was experimentally reduced. Our results are consistent with Dnmt1 knockdown influencing specific pathways and not causing general transcriptional response. This is a finding that is also seen with other insect species. We also characterized the methylome of B. tabaci and assessed the influence of Dnmt1 knockdown on cytosine methylation. This species has methylome characteristics comparable to other Hemipterans regarding overall level, enrichment within gene bodies, and bimodal distribution of methylated/non-methylated genes. Very little differential methylation was observed, and difference of methylation were not associated with differences of gene expression. The effect on Wnt presents an interesting new candidate pathway for future studies.