In this work, magnetic nanoparticles based on magnetite were successfully prepared via rapid microwave-assisted synthesis. In order to obtain the ternary core–shell Fe3O4/SiO2/TiO2 nanocomposite, first magnetite (Fe3O4) nanoparticles were coated with a protective layer of silica (SiO2) and finally with titania (TiO2). The composite configuration comprising porous and photoactive shells should facilitate the removal of organic micropollutants (OMPs) from water. Furthermore, the magnetic core is critical for processing the management of the photocatalytic powder suspension. The magnetization of the prepared magnetic nanoparticles was confirmed by vibrating-sample magnetometry (VSM), while the structure and morphology of the core–shell nanocomposite were investigated by means of XRD, FTIR, and SEM. Adsorption and photocatalysis were evaluated by investigating the removal efficiency of ciprofloxacin (CIP) as a model OMP using the prepared magnetic core–shell nanocomposite under UV-A light irradiation. It was found that the Fe3O4/SiO2/TiO2 nanocomposite showed good synergistic adsorption and photocatalytic properties. The measurement of iron in eluate confirmed that no leaching occurred during the photocatalytic examination. The recovery of magnetic nanocomposite by an external magnetic field confirmed that the magnetically separated catalyst is highly suitable for recycling and reuse.