. Effect of murine strain on metabolic pathways of glucose production after brief or prolonged fasting. -Background strain is known to influence the way a genetic manipulation affects mouse phenotypes. Despite data that demonstrate variations in the primary phenotype of basic inbred strains of mice, there is limited data available about specific metabolic fluxes in vivo that may be responsible for the differences in strain phenotypes. In this study, a simple stable isotope tracer/NMR spectroscopic protocol has been used to compare metabolic fluxes in ICR, FVB/N (FVB), C57BL/6J (B6), and 129S1/SvImJ (129) mouse strains. After a short-term fast in these mice, there were no detectable differences in the pathway fluxes that contribute to glucose synthesis. However, after a 24-h fast, B6 mice retain some residual glycogenolysis compared with other strains. FVB mice also had a 30% higher in vivo phosphoenolpyruvate carboxykinase flux and total glucose production from the level of the TCA cycle compared with B6 and 129 strains, while total body glucose production in the 129 strain was ϳ30% lower than in either FVB or B6 mice. These data indicate that there are inherent differences in several pathways involving glucose metabolism of inbred strains of mice that may contribute to a phenotype after genetic manipulation in these animals. The techniques used here are amenable to use as a secondary or tertiary tool for studying mouse models with disruptions of intermediary metabolism. nuclear magnetic resonance; tricarboxylic acid cycle; phosphoenolpyruvate carboxykinase; metabolic flux; stable isotope tracers; deuterium; mouse phenotype THE MOUSE HAS BEEN EMPHASIZED in studies of type 2 diabetes and obesity because of genetic homologies with humans and the relative simplicity of generating targeted mutations. Because these disorders result from a complex interaction among multiple genes and the environment, it is attractive in principle to probe individual genes to determine the magnitude of their contribution to the disease phenotype. However, the potential for a single mutation to produce diabetes or obesity is exquisitely sensitive to the inbred strain background (8). For example, mutations have been described in both the leptin receptor gene and the leptin gene. In a B6 background, either mutation produces obesity and transient diabetes, but the same mutations produce a severe diabetes phenotype in the C57/BlKSJ strain (12). More recently, Colombo et al. (9) found that the depletion of adipose tissue and hyperinsulinemia in the A-ZIP/F-1 lipoatrophic mouse was similar in both the FVB and B6 inbred backgrounds, but on the B6 background, the hyperglycemia, hypertriglyceridemia, and mortality were all attenuated. It was suggested that the B6 strain has inherently higher triglyceride clearance in the liver, which may protect against adverse effects of circulating triglycerides. A related problem is the observation that disruption of critical features of glucose metabolism may fail to yield the expected result. For example, ...