16A significant number of Southeast Asian mammal species described in the 19 th and 20 th 17 century were subsequently synonymized and are now considered subspecies. Many are 18 affected by rapid habitat loss and there is thus an urgent need to re-assess the conservation 19 status based on species boundaries established with molecular data. However, such data are 20 lacking for many populations and subspecies. We document via a literature survey and 21 empirical study how shotgun sequencing of faecal DNA is a still underutilized but powerful 22 tool for accelerating such evaluations. We obtain 11 mitochondrial genomes for three 23 subspecies in the langur genus Presbytis through shotgun sequencing of faecal DNA (P. 24 femoralis femoralis, P. f. percura, P. siamensis cf. cana). The genomes support the 25 resurrection of all three subspecies to species based on multiple species delimitation 26 algorithms (PTP, ABGD, Objective Clustering) applied to a dataset covering 40 species and 27 43 subspecies of Asian colobines. For two of the newly recognized species (P. femoralis, P. 28 percura), the results lead to an immediate change in the IUCN status to Critically Endangered 29 due to small population estimates and fragmented habitat. We conclude that faecal DNA 30 should be more widely used for clarifying species boundaries in endangered mammals. 32 Human impacts on the environment have rapidly accelerated species extinction via habitat 33 degradation and climate change. Recent report by Intergovernmental Science-Policy Platform 34 on Biodiversity and Ecosystem Services (IPBES) predicts that climate change has already 35 affected the distribution of nearly half (47%) of land-mammals 1 . Conservation efforts are 36 urgently needed but are hampered by the lack of data for a large number of mammal species, 37 subspecies, and populations which face imminent extinction 2,3,4 . A typical example is Asian 38 primates for which 70% of the species are threatened with extinction 5 . Effective conservation 39 programs are needed but they require a robust understanding of species numbers and 40 boundaries based on up-to-date taxonomic information 6,7 . Unfortunately, this information is 41 lacking for many rare, globally threatened, and elusive mammalian species. Many lack 42 molecular data and collecting these data is difficult because invasive sampling that would 43 yield fresh tissues is often not feasible.
44This leaves only three alternative sources of DNA. The first is museum specimens, but the 45 number of samples in museums tends to be small and many were collected in the 19 th or early 46 20 th century thus reflecting (historic) genetic diversity prior to extensive habitat loss. The 47 second is tissue samples obtained from specimens that died of "natural causes" such as road 48 accidents. The third source of genetic material is non-invasive samples such as hair and 49 faeces. Arguably, faecal samples are still an underappreciated source of information although 50 they could be collected in good numbers during ro...