Gas hydrate occurrence is one of the possible mechanisms invoked for iron sulfide formation.A high-resolution rock magnetic study was conducted in IODP Expedition 316 Hole C0008C located in the Megasplay Fault Zone of the Nankai Trough, offshore Japan. In this particular zone, no bottom simulating reflectors (BSR), indicating the base of the gas hydrate stability field, have been identified. Two hundred and eighteen Pleistocene samples were collected from 70 to 110 m CSF in order to document the changes in the concentration, grain size, and rock magnetic parameters of magnetic minerals, through the gas hydrate-bearing horizons. Two different populations of magnetic grains are recognized in the pseudosingle domain range. Three types of magnetic mineral assemblages are identified: iron oxides (magnetite), ferrimagnetic iron sulfides (greigite and pyrrhotite), and their mixture. Greigite and pyrrhotite are authigenic and constitute six layers, called IS1-IS6. IS1, IS3, IS4, and IS6 are associated with pore water anomalies, suggesting the occurrence of gas hydrates and anoxic conditions. IS2 and IS5 are probable gas hydrates horizons, although there is no independent data to confirm it. The remaining intervals are mainly composed of detrital iron oxides and paramagnetic iron sulfides. Two scenarios based on different diagenetic stages are proposed to explain the variations in the magnetic properties and mineralogy over the studied interval. The results suggest that rock magnetism appears useful to better constrain the gas hydrate distribution in Hole C0008C, and counterbalances the low resolution of pore water analyses and the absence of a BSR.