A dynamic polarization controller (DPC) is a crucial component in fiber optic communication, optical imaging, and quantum technologies. The DPC can transform any input state of polarization (SOP) into any desired SOP to overcome polarization-related impairments resulting from high internally and externally induced birefringence. In this paper, a low-loss silicon photonics-integrated DPC was designed and demonstrated experimentally. The whole chip was fabricated using industry-standard silicon-on-insulator technology. Using the butting coupling method, the coupler loss was reduced to < 2 dB, and the total loss of DPC was reduced to 5.7 dB. Using a variable-step simulated annealing method, a low-noise photodetector, and high-static-extinction-ratio devices, a dynamic polarization extinction ratio of greater than 30 dB was achieved. The size of the DPC on the chip was 5.20 mm×0.12 mm×0.80 mm. The DPC utilized a 0°/45°/0°/45° structure, permitting the realization of arbitrary polarization-based coordinate conversion with endless polarization control. The 0° and 45° transform structures and matrices were presented, and the principle of the 0° and 45° structures was interpreted in detail using the Poincaré sphere. A simulation using Lumerical was employed to optimize the polarization rotator-splitter, which can transform the TM<sub>0</sub> mode light in one waveguide to the TE<sub>0</sub> mode light in the other waveguide while the TE<sub>0</sub> mode light in one waveguide remained unchanged. Base on the optimized structures, the static polarization extinction ratio of DPC can be measured to achieve a value greater than 40 dB. The characteristics of the thermal phase shift (TPS) were evaluated using a Mach-Zehnder modulator. The length of the TPS was 400 μm, and the resistance of the metal heater was 2.00 kΩ. The maximum power comsumed by the total four TPSs was 0.2 W. The modulation bandwidth of the DPC designed by our group was approximately 30 kHz. By considering an applied voltage of 5.6 V in case of the TPS, the bandwidth-voltage product was 5.6×30=168 kHz·V. To optimize the DPC parameters, such as the step length, electronic noise, and static polarization extinction ratio, numerical simulation results of the simulated annealing approach were analyzed in detail. In conclusion, a low-loss silicon photonics-integrated DPC was designed and demonstrated experimentally. A dynamic polarization extinction ratio of greater than 30 dB was achieved using the variable-step simulated annealing approach. The DPC is expected to be utilized in fiber or quantum communication systems to minimize size and further decrease costs.