To obtain high aquaculture output, up to 6,500 of fish or 10,000 shrimp are needed per 667 m 2 based on our investigations. As a result, high-protein feeds are needed in these aquatic systems. Urea, liquid cow manure, or even pig manure and chicken manure with high N content are often supplemented during this process (Lin and Yi, 2003; Moav et al., 1977; Soletto et al., 2005; Zoccarato et al., 1995). Budget-wise, about 87% of N comes from feed, while only 1% is released by denitrification (Acosta-Nassar et al., 2010). This results in the generation of substantial amounts of polluted effluent containing unconsumed feed and feces, and thus, leads to an increase in environmental pollution (Crab et al., 2007; Read and Fernandes, 2003). In these kinds of aquatic systems, levels of ammonia-N (NH 3-N), nitrite, and dissolved oxygen (DO) drastically affect aquaculture production (Crab et al., 2007; Zoccarato et al., 1995). Of these factors, NH 3-N is a critical concern; as it leads to an increase in nitrite and a decrease in DO due to the nitrification (Grommen et al., 2002; Kim et al., 2008; Ruiz et al., 2003). In addition, it is toxic for aquatic organisms (Romano and Zeng, 2013; Thompson et al., 2002). The presence of NH 3-N is inevitable, especially during intensive aquaculture, as they are generated from feed residues and manure supplements. Thus, there has been a lot of research trying to develop integrated pond systems using duckweed (Steen et al., 1999; Zimmo et al., 2003) or combined systems with other aquatic organisms such as algae (van der Steen et al., 1998), and cyanobacteria (Duong and Tiedje, 1985). Using the duckweed treatment system, not only NH 3-N, but also bacterial pathogens (El