In many countries, 40–60% of the traffic accidents occur at junctions, making the reduction of junction accidents paramount to achieving UN Sustainable Development Goals. In Japan, the road safety guidelines specify the proximity between junctions and non-perpendicular angles at junctions as the two main risk factors behind junction accidents, yet their impact remains understudied. Using binomial logistic regression models, this study investigates the impact of junction intervals and junction angles on the severity of traffic accidents. The study found that, in general, (1) shorter intervals between adjacent junctions helps reduce the risk of serious accidents, which is the opposite of the current road safety guidelines in Japan, and (2) results from the junction angle analysis were mixed but there was no evidence that the roads should meet at a right angle to reduce traffic accidents. Some types of accidents also returned a non-linear curve, e.g., vehicle-to-vehicle collisions at four-armed junctions involving a driver aged 65 years and over have the highest risk of fatal/serious accidents when adjacent junctions were 32 m apart, and the risk reduces at a shorter or longer interval. These results suggest that the current road safety guidelines require updating to improve road safety around junctions.