Dissolved oxygen (DO) plays a pivotal role in sustaining marine ecosystems. The Bohai Sea in China is a semi-enclosed sea, and oxygen-deficit events occur from time to time due to human activities. At present, there is a notable absence of any convenient and precise method for obtaining three-dimensional spatial data on DO, and the exploration of the physical mechanisms influencing oxygen deficit remains incomplete. This investigation uses the linear radial basis function (RBF-Linear) fitting method to conduct three-dimensional spatial interpolation for DO, which demonstrates minimal inaccuracy. Then, the RBF-Linear fitting method is utilized to collect a comprehensive three-dimensional spatial dataset encompassing temperature, salinity, and DO in the Bohai Sea in August from 2016 to 2018. The results indicate discernible interannual variations in the extent, area, and distribution of oxygen deficiency during summer in the Bohai Sea. Mechanism analysis reveals that intense precipitation episodes and an increase in wind stress curl exacerbate oxygen depletion. Additionally, the degree, location, and area of the two oxygen-deficit cores (off the Yellow River Estuary and off the Qinhuangdao) in the Bohai Sea are influenced by several factors, including current velocity, direction, local circulation position, and net horizontal transport rate. Furthermore, the study suggests that oxygen deficiency in the Bohai Sea region is currently in its early stages, with a limited degree of injury and a restricted range of influence. The use of a three-dimensional spatial interpolation method to create a complete DO field in three-dimensional space simplifies the research challenges associated with marine oxygen deficit. Moreover, this study holds particular significance for guiding the development of marine fisheries.