The DP subregion of the human major histocompatibility complex contains two closely linked gene pairs, DPa, DPOi and SXa, SX13. The exon-intron organization and the complete DNA sequence of the SXa gene are reported here. There are several mutations within the SXot gene which strongly suggest that it is a pseudogene. These include two frameshift mutations, one in the al domain and the other in the cytoplasmic domain. A 5' splice site mutation at the end of the aLl exon also exists. DNA sequence homology between DPoa and SXot suggests that these genes arose through a gene duplication event.The class II genes of the major histocompatibility complex (MHC) encode cell surface glycoproteins that function in the regulation of the immune response by association with "processed" foreign antigen to provide a recognition unit for helper T cells as well as for class TI-directed cytotoxic T cells. Class II MHC proteins are heterodimers (an a chain of 33 kilodaltons and a 1 chain of 29 kilodaltons [21]) and in humans are found on the surfaces of B cells, macrophages, and activated T cells. In humans the class II genes are located within the HLA-D region of chromosome 6. This region is homologous to the Ia region of chromosome 17 in mice. To date six human a-chain genes and seven 13-chain genes have been cloned as cDNAs or as genomic clones (for reviews see reference 8 and A. J. Korman, J. M. Boss, T: Spies, R. Sorrentino, K. Okada, and J. L. Strominger, Immunol. Rev., in press). The cloning and subsequent sequence analyses of some of these genes have helped organize the genes into three families. The DR region contains one a-and three 13-chain genes (22a); the DQ (formally DC) region contains the DQa and DQ,B genes as well as a homologous pair of DQ-like genes called DXa and DX1 (16a). The DR and DQ families have analogous counterparts in mice, namely, IE and IA, respectively. The third family, DP (formally SB), has been shown to contain four genes which are closely linked, i.e., within 120 kilobases (kb) of DNA (17,20,24