Insertion sequence (IS) hybridization was used to define the structure of a population of Rhirobium meliloti isolated directly from soil and from nodules of Medicago sativn (alfalfa) and Melilotus alba (sweet clover) grown under controlled conditions and inoculated with a suspension of the same soil. The detection of R. meliloti isolated from soil on agar plates was facilitated by use of a highly species specific DNA probe derived from ISRm5. All R. meliloti o'btained directly from soil proved to be symbiotic (i.e. noddated and fixed nitrogen with alfalfa). Analysis of 293 R. meliloti isolates revealed a total of 17 distinct I S genotypes of which 9,9 and 15 were from soil, M. alba and M. satina, respectively; 8 genotypes were common to soil and both plant species. The frequency of R. meliloti genotypes from soil differed markedly from that sampled from nodules of both legume species: 5 genotypes represented about 90% of the isolates from soil whereas a single genotype predominated among isolates from nodules accounting for more than 55% of the total. The distribution of genotypes differed between M. satiaa and M. alba indicating species variation in nodulation preferences for indigenous R. meliloti. The data are discussed in the context of competition for nodalation of the host plant and the selection of Rhizobium strains for use in legume inoculants. This study has ecological implications and suggests that the composition of R meliloti populations sampled by the traditionally used host legume may not be representative of that actually present in soil. Segovia L, Pincro D, Palaaos R, Marthez-Romem E (1991) Genetic structure of a soil population of nonsymbiotic Rhbbium legumintmrum. Applied and Environmental Microbiology, 57, 426-433. Smith GE, Summers MD (1980) The bidirectional transfer of DNA and RNA to nitroceIlulose or diazobenzyloxymethyl paper. Analyticnl Biochemistry, 109,123-129. Snedecor CW, Cochran WG (1980) Statistical Methods, Iowa State University Press. SoberonChdvez G, Ndkra R, Olivera H, Segovia L (1986) Genetic rearrangements of a Rhizobium phnsmli symbiotic plasmid. Journal of Bacteriology, 167,487-491. SoberonChdvez G, Ndjera R (1989) Isolation from Soil of Rhiwbium leguminosnrum lacking symbiotic information. Canadian Journal of Microbiology, 35,464-468. Thurman NP, Bromfield ESP (1988) Effect of variation within and between Medicago and Melilotus species on the composition and dynamics of indigenous populations of Rhizqbium meliloti.Soil Biology and Biochemistry, 20,31-38. Vincent J M (1970) A Manual for the Practical Study of Root-nodule Bacteria I.B.P. Blackwell Scientific Publications, Oxford. Wheatcroft R, Watson RJ (1988) Distribution of insertion sequence ISRml in Rhizobium meliloti and other Gram-negative bacteria. Journal of Gcneml Microbiology, 134,113-121. Wheatcroft R, Bromfield ESP, Laberge S, Barran LR (1993) Species specific DNA probe and colony hybridization of Rhizobium rneliloti. In: New Horizons in Nitrogen Fixation (eds Palacios R, Mora J, Newton WE) p. 661. Kluwer, Bosto...