Examination of supernatant fractions from broth cultures ofLactobacilli have been engineered to express a variety of heterologous proteins of interest, including antigens, enzymes, and more recently therapeutic single-chain antibodies and pathogen receptors (5,8,12,30). Certain features of lactobacilli make them attractive as recombinant protein delivery vehicles. These include their generally regarded as safe (GRAS) status; their presence in dairy, meat, and vegetable food fermentation processes; and their ability to reside naturally and persist on mucosal surfaces where they can exert certain beneficial effects to the host.A number of protein expression and targeting systems in lactobacilli have been developed which allow accumulation of the protein either intracellularly, anchored to the cell surface, or in the extracellular environment. Protein secretion and surface anchoring systems rely on the utilization of functional elements of extracellular proteins to efficiently secrete and/or anchor the heterologous protein to the cell surface. The majority of extracellular proteins in gram-positive bacteria are at some stage anchored to the cell wall either via covalent or noncovalent cell wall binding domains. Covalent attachment to the cell wall or cytoplasmic membrane occurs via the carboxyterminal LPXTG-type or amino-terminal LXXC sorting signals, respectively (18). Noncovalent attachment to the cell wall or cell wall components occurs either via specific repetitive LysM, YG, or choline-binding GW or S-layer homology domains (3, 7, 18) or via nonspecific cationic domains (2, 31). Varying amounts of both covalent and noncovalent surface anchored proteins may be released into the environment due to cell wall turnover, cell lysis, or proteolytic events (4,21,23,24).Our research is geared towards the development of heterologous protein expression systems using the targeting regions of native lactobacilli surface proteins. Our model organism is Lactobacillus fermentum BR11, which is a vaginal tract isolate of a guinea pig that has been shown to be amenable to genetic manipulation (25). Members of the L. fermentum-Lactobacillus reuteri group are commonly found inhabitants of mucosal surfaces of mammals and are one of the predominant Lactobacillus species found in the intestines of humans. To date, we have characterized a number of different surface proteins from L. fermentum BR11 and tested them as heterologous protein fusion partners. These include the noncovalently anchored cystine binding surface protein, BspA, and the covalently anchored LPXTG-containing proteins Mlp and Rlp (10,29,30,32). Here we report the identification and characterization of a novel abundant small exported protein (Sep) from L. fermen-