The functions of quinone reductase 2 have eluded researchers for decades even though a genetic polymorphism is associated with various neurological disorders. Employing enzymatic studies using adrenochrome as a substrate, we show that quinone reductase 2 is specific for the reduction of adrenochrome, whereas quinone reductase 1 shows no activity. We also solved the crystal structure of quinone reductase 2 in complexes with dopamine and adrenochrome, two compounds that are structurally related to catecholamine quinones. Detailed structural analyses delineate the mechanism of quinone reductase 2 specificity toward catechol quinones in comparison with quinone reductase 1; a side-chain rotational difference between quinone reductase 1 and quinone reductase 2 of a single residue, phenylalanine 106, determines the specificity of enzymatic activities. These results infer functional differences between two homologous enzymes and indicate that quinone reductase 2 could play important roles in the regulation of catecholamine oxidation processes that may be involved in the etiology of Parkinson disease.Cytosolic quinone reductases consist of two enzymes termed quinone reductase 1 (also referred to as QR1, 2 NQO1, DTdiaphorase) and quinone reductase 2 (also referred to as QR2, NQO2) which catalyze the two-electron reduction of quinones without the formation of reactive intermediates (1). They play important roles against oxidative stress imposed by quinones. Quinone reductase 2 was first described in 1961 (2), although its biological function has eluded scientists for decades until recently (3-5). However, quinone reductase 1 has been very well studied (6). In particular, conclusive evidence points to QR1 having a protective function for cells against the toxicity of electrophiles and reactive forms of oxygen. In addition, its induction protects cells against carcinogenesis. Therefore, QR1 is acknowledged as belonging to the group of enzymes classified as phase 2 detoxification enzymes.There are two major classes of quinones: 1,4-quinones (paraquinones or p-quinones, see Fig. 1) and 1,2-quinones (orthoquinones, catechol quinones or o-quinones). Both classes of quinones can be derived from oxidation of xenobiotics as well as endogenous molecules. 1,4-Quinones include vitamin K analogues, such as VK3 (menadione), whereas catechol quinones include the oxidation products of catecholamines, amino acid tyrosine as well as estradiols (7,8).Although QR2 and QR1 have high sequence and structural similarities, they possess significantly different catalytic actions (9). Both QR1 and QR2 can catalyze the two-electron reduction of p-quinones such as menadione (vitamin K3), only QR1 uses NADH and NADPH as electron donors. Instead, QR2 can use N-ribosyldihydronicotinamide (NRH) or a variety of NRH analogues as electron donors in the reduction of quinones in vitro (see Fig. 1) (10). While NADH and NADPH are electron donors for a variety of enzymes in various reactions and their biological metabolism and concentrations are very well charact...