The majority of melanoma mutations are C>T transitions, and most bear UV signatures. However, other process may contribute to the high C>T mutation rate. Okura et al., have demonstrated immunohistochemical evidence of deaminating enzymes, activation-induced cytidine deaminase (AID) and apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3B (APOBEC3B) in melanoma. Both have been implicated in cancer. While further validation is necessary, these findings warrant consideration of a role for deamination in melanomagenesis. Deamination primarily drives C>T transitions. Compared with trunk/extremity melanomas, acral melanomas display a significantly higher percentage of 'spontaneous' and 'AID' mutation signature events suggesting deamination may be particularly important in this subgroup.Key words: BRAF -deaminase -melanoma -mutagenesis
Accepted for publication 8 May 2014Commentary Melanoma is a highly genomically unstable tumor with one of the highest mutation rates in cancer (1,2). The majority of melanoma mutations are C>T transitions, and while primarily due to UV light, other processes may play a role. Okura et al., demonstrate immunohistological evidence of deaminating enzymes, activationinduced cytidine deaminase (AID) and apolipoprotein B mRNAediting enzyme catalytic polypeptide-like 3B (APOBEC3B) in melanoma with AID expression enriched in BRAF mutant tumors (3). APOBEC3B is thought to play a role in innate immunity against endogenous retroelements and exogenous viruses (4). AID normally functions to create mutations and double-strand breaks to allow recombination for antibody diversification (5). Both AID (6) and APOBEC3B (4) have been implicated in cancer. Okura et al., also noted AID association with BRAF-mutated tumors, which leads to the question as to whether AID could be involved in driving the T>A V600E mutation. In mice, overexpression of AID primarily causes C>T mutations, but 1 T>A (4%) mutation was noted (6). Of note, this is also around the level reported for UV causing a T>A transversion (5% by UVB, 3% by sunlight and 1% by UVA) (7). Even though this frequency is low, it could be a causative factor. While further validation is necessary, the findings of Okura et al., warrant the consideration of a potential role for deamination in melanomagenesis.The primary mutation caused by deamination is a C>T transition. Overexpression of AID has suggested a signature sequence of 5 0 (G/A)C(A/C/T)3 0 (8) for this event. This is in contrast to a signature sequence 5 0 NCG3 0 for spontaneous deamination and 5 0 (C/ T)CN3 0 for UV (8). The signature sequence for APOPBEC3B is 5 0 (C/G)TC(A/G)3 0 (4), but it is entirely included in the UV signature, making it difficult to tease out a contribution compared with UV. However, it is possible to evaluate AID, UV and spontaneous deamination signature mutations in melanoma. Data sets of mutations in melanoma have confirmed UV signature C>T transitions solidifying UVs role in melanomagenesis. In COLO-82 melanoma, 71% of dinucleotide substitutions w...